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6 篇文献
 
Faster placement of hydrogens in protein structures by dynamic programming  
M. Word and coauthors from the Richardsons' 3D Protein Structure laboratory at Duke University proposedot scoresto measure interatomic interactions in molecular structures. Their program REDUCE uses t......
ACM Journal of Experimental Algorithms  2008
0次引用 0 0
Fast and accurate search for non-coding RNA pseudoknot structures in genomes  
Motivation: Searching genomes for non-coding RNAs (ncRNAs) by their secondary structure has become an important goal for bioinformatics. For pseudoknot-free structures, ncRNA search can be effective b......
Bioinformatics/computer Applications in The Biosciences  2008
3次引用 0 0
Reflections on Multivariate Algorithmics and . . .  
Research on parameterized algorithmics for NP-hard problems has steadily grown over the last years. We survey and discuss how parameterized complexity analysis naturally develops into the field of mul......
0次引用 0 0
Exploiting bounded signal flow for graph orientation based on cause-effect pairs  
Background: We consider the following problem: Given an undirected network and a set of sender–receiver pairs, direct all edges such that the maximum number of “signal flows ” defined by the pairs can......
Proceedings of the 1st International ICST Conference on Theory and Practice of Algorithms in Systems (TAPAS 2011  
5次引用 0 0
Parameterized Complexity and Biopolymer Sequence Comparison  
The article surveys parameterized algorithms and complexities for computational tasks on biopolymer sequences, including the problems of longest common subsequence, shortest common su- persequence, pa......
The Computer Journal  2008
1次引用 0 0
Maximum common subgraph: some upper bound and lower bound results  
BACKGROUND: Structure matching plays an important part in understanding the functional role of biological structures. Bioinformatics assists in this effort by reformulating this process into a problem......
BMC Bioinformatics  2006
2次引用 0 0

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