Homology Modeling
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Homology modeling, also known as comparative modeling of protein, refers to constructing an atomic-resolution model of the target protein from its primary structure|amino acid sequence and an experimental three-dimensional structure of a related homologous protein (the template). Homology modeling relies on the identification of one or more known protein structures likely to resemble the structure of the query sequence, and on the production of an sequence alignment|alignment that maps residues in the query sequence to residues in the template sequence. It has been shown that protein structures are more conserved than protein sequences amongst homologues, but sequences falling below a 20% sequence identity can have very different structure. Evolutionarily related proteins have similar sequences and naturally occurring homologous proteins have similar protein structure. It has been shown that three-dimensional protein structure is evolutionarily more conserved than would be expected on...
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